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Solution Structure of the DNA-binding TubR fragment from Clostridium Botulinum
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCO 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 2 3D HN(CO)CA 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 3 3D HNCA 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 4 3D CBCA(CO)NH 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 5 3D HNCACB 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 6 3D H(CCO)NH 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 7 2D 1H-1H NOESY 225 uM [U-15N] TubR, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM D-10 DTT 90% H2O/10% D2O 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 9 2D 1H-15N HSQC 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 8 2D 1H-13C HSQC 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 10 2D 1H-13C HSQC aromatic 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 11 3D C(CO)NH 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 12 3D HCCH-TOCSY 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 13 3D HCCH-TOCSY 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600 14 3D 1H-15N NOESY 225 uM [U-15N] TubR, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM D-10 DTT 90% H2O/10% D2O 80.13 mM 6.4 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics CYANA molecular dynamics Amber distance geometry MolProbity
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 150 Conformers Submitted Total Number 20 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 data analysis CARA Keller and Wuthrich 3 chemical shift assignment CARA Keller and Wuthrich 4 peak picking CARA Keller and Wuthrich 5 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 6 refinement MolProbity Richardson 7 geometry optimization MolProbity Richardson 8 processing TopSpin Bruker Biospin 9 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman