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GSTF1 F122T variant from Alopecurus myosuroides
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Morpheus screen
Crystal Properties Matthews coefficient Solvent content 3.32 62.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.59 α = 90 b = 112.59 β = 90 c = 104.3 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2018-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.78 43.6 99.8 0.04 10.7 1.8 8791
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.78 2.93 99.1 0.456
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6TJS 2.78 43.6 8717 478 99.725 0.184 0.1802 0.1812 0.2505 0.2526 78.244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.003 -3.003 6.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.086 r_dihedral_angle_4_deg 21.996 r_dihedral_angle_3_deg 19.486 r_lrange_other 14.498 r_lrange_it 14.497 r_scangle_it 11.93 r_scangle_other 11.925 r_mcangle_it 10.815 r_mcangle_other 10.81 r_scbond_other 7.981
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.086 r_dihedral_angle_4_deg 21.996 r_dihedral_angle_3_deg 19.486 r_lrange_other 14.498 r_lrange_it 14.497 r_scangle_it 11.93 r_scangle_other 11.925 r_mcangle_it 10.815 r_mcangle_other 10.81 r_scbond_other 7.981 r_scbond_it 7.978 r_dihedral_angle_1_deg 7.81 r_mcbond_other 7.508 r_mcbond_it 7.507 r_angle_other_deg 2.402 r_angle_refined_deg 1.679 r_nbd_other 0.257 r_symmetry_nbd_other 0.233 r_nbd_refined 0.223 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.143 r_symmetry_nbd_refined 0.128 r_symmetry_nbtor_other 0.096 r_chiral_restr 0.068 r_bond_other_d 0.035 r_gen_planes_other 0.009 r_bond_refined_d 0.008 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1649 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling AMoRE phasing