6TSP

Marasmius oreades agglutinin (MOA) inhibited by zinc

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3EF2

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293.15	0.1 M cacodylate/HCl pH 6.5, 16% PEG 8000, 0.5 M sodium acetate, 50 mM ZnCl2, 10 mM CaCl2, 12.5% DMSO, 5 mM DTT

Crystal Properties
Matthews coefficient	Solvent content
3.3	62.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 121.071	α = 90
b = 121.071	β = 90
c = 99.624	γ = 120

Symmetry
Space Group	P 63 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2013-03-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29	1.28242	ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.85	46.4	88.2	0.066	0.073	0.031	0.999	18.2	4.4		64833

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.85	1.88			1.437	1.767	0.986	0.489

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3EF2	1.85	46.4	35709	1872	94.566	0.208	0.2068	0.2347	32.884

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.483	0.742		1.483		-4.811

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.305
r_dihedral_angle_4_deg	22.43
r_dihedral_angle_3_deg	14.014
r_dihedral_angle_1_deg	9.377
r_lrange_it	5.199
r_lrange_other	5.192
r_scangle_it	4.479
r_scangle_other	4.477
r_scbond_it	3.388
r_scbond_other	3.387
r_mcangle_it	3.106
r_mcangle_other	3.106
r_mcbond_other	2.676
r_mcbond_it	2.675
r_angle_refined_deg	0.811
r_angle_other_deg	0.595
r_symmetry_nbd_refined	0.4
r_nbd_other	0.266
r_nbd_refined	0.207
r_symmetry_metal_ion_refined	0.207
r_symmetry_xyhbond_nbd_refined	0.197
r_metal_ion_refined	0.186
r_symmetry_nbd_other	0.183
r_nbtor_refined	0.169
r_xyhbond_nbd_refined	0.135
r_xyhbond_nbd_other	0.123
r_symmetry_nbtor_other	0.105
r_gen_planes_refined	0.041
r_gen_planes_other	0.033
r_bond_refined_d	0.013
r_chiral_restr	0.011
r_bond_other_d	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2278
Nucleic Acid Atoms
Solvent Atoms	137
Heterogen Atoms	132

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing