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Structure of native gp41 derived peptide fusion inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 292.15 Ammonium sulfate, PEG 3350, Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.42 49.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.875 α = 90 b = 44.875 β = 90 c = 209.645 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 38.241 100 0.152 0.048 0.997 8 11.1 14982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 0.669 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.45 38.24 14980 710 99.953 0.19 0.1879 0.186 0.2426 0.2392 27.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.856 0.928 1.856 -6.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.128 r_dihedral_angle_4_deg 15.095 r_dihedral_angle_3_deg 13.986 r_scangle_it 6.362 r_scangle_other 6.355 r_lrange_it 5.616 r_dihedral_angle_1_deg 5.355 r_scbond_it 5.329 r_scbond_other 5.303 r_lrange_other 5.247
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.128 r_dihedral_angle_4_deg 15.095 r_dihedral_angle_3_deg 13.986 r_scangle_it 6.362 r_scangle_other 6.355 r_lrange_it 5.616 r_dihedral_angle_1_deg 5.355 r_scbond_it 5.329 r_scbond_other 5.303 r_lrange_other 5.247 r_mcangle_it 5.023 r_mcangle_other 5.016 r_mcbond_it 4.138 r_mcbond_other 4.132 r_rigid_bond_restr 4.109 r_angle_refined_deg 1.71 r_angle_other_deg 1.585 r_xyhbond_nbd_refined 0.311 r_symmetry_nbd_refined 0.253 r_nbd_refined 0.218 r_nbd_other 0.183 r_symmetry_nbd_other 0.174 r_nbtor_refined 0.174 r_symmetry_xyhbond_nbd_refined 0.133 r_chiral_restr 0.086 r_symmetry_nbtor_other 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 535 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling ACORN phasing