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Structure of native gp41 derived peptide fusion inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 293.15 PEG 4000, 2-Propanol, Citrate
Crystal Properties Matthews coefficient Solvent content 2.49 50.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.963 α = 90 b = 44.963 β = 90 c = 209.01 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 38.3 100 0.083 0.997 7.5 14.5 23184
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 0.396
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.25 38.28 23183 1114 99.97 0.164 0.162 0.1595 0.2104 0.2068 21.651
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.862 0.431 0.862 -2.795
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.079 r_dihedral_angle_4_deg 19.075 r_dihedral_angle_3_deg 13.675 r_lrange_it 5.646 r_scangle_it 5.36 r_lrange_other 5.359 r_scangle_other 5.355 r_rigid_bond_restr 5.353 r_scbond_it 4.315 r_scbond_other 4.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.079 r_dihedral_angle_4_deg 19.075 r_dihedral_angle_3_deg 13.675 r_lrange_it 5.646 r_scangle_it 5.36 r_lrange_other 5.359 r_scangle_other 5.355 r_rigid_bond_restr 5.353 r_scbond_it 4.315 r_scbond_other 4.312 r_dihedral_angle_1_deg 3.74 r_mcangle_other 3.339 r_mcangle_it 3.313 r_mcbond_it 2.548 r_mcbond_other 2.547 r_angle_refined_deg 1.732 r_angle_other_deg 1.589 r_nbd_refined 0.332 r_symmetry_nbd_other 0.24 r_xyhbond_nbd_refined 0.214 r_nbd_other 0.194 r_symmetry_nbd_refined 0.192 r_nbtor_refined 0.175 r_symmetry_xyhbond_nbd_refined 0.118 r_chiral_restr 0.092 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 564 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling ACORN phasing