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Crystal structure of the flavin-dependent monooxygenase PieE in complex with FAD and substrate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6U0P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 295 30% PEG 400, 0.2M MgCl2, and 0.1 HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.64 53.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.339 α = 90 b = 187.129 β = 90 c = 239.089 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2016-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.52 49.12 100 0.131 0.141 0.053 0.996 11.1 7 138900
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.52 2.56 100 1.337 1.447 0.551 0.489 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6U0P 2.52 49.12 131942 6860 99.98 0.1893 0.1867 0.2395 0.2312 RANDOM 55.781
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.62 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.383 r_dihedral_angle_4_deg 20.913 r_dihedral_angle_3_deg 17.077 r_dihedral_angle_1_deg 6.964 r_angle_refined_deg 1.473 r_chiral_restr 0.103 r_bond_refined_d 0.007 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26549 Nucleic Acid Atoms Solvent Atoms 700 Heterogen Atoms 669
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing