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Clotrimazole bound complex of Acanthamoeba castellanii CYP51
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Q2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 296 0.1 M sodium-cocydylate; 0.12 M Guanidine hydrochloride; 2% Jefframine M-600, pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.02 59.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.98 α = 90 b = 177.22 β = 90 c = 181.52 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M mirrors 2019-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.92 127.13 100 0.401 0.417 0.994 7.12 13.53 83269 70.545
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.92 3 99.9 4.694 4.876 0.264 0.64 13.607
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6Q2C 2.92 127.13 79148 4043 99.98 0.2129 0.209 0.212 0.2905 0.289 RANDOM 79.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.64 -3.32 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.229 r_dihedral_angle_3_deg 18.56 r_dihedral_angle_4_deg 16.095 r_dihedral_angle_1_deg 7.102 r_angle_refined_deg 1.577 r_angle_other_deg 1.02 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.229 r_dihedral_angle_3_deg 18.56 r_dihedral_angle_4_deg 16.095 r_dihedral_angle_1_deg 7.102 r_angle_refined_deg 1.577 r_angle_other_deg 1.02 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21135 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 420
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing