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Constitutive decay element CDE1 from human 3'UTR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 350 uM CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 600 2 2D 1H-13C HSQC 350 uM CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 600 3 2D PFIDS 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 600 4 2D gamma-HCN 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 800 5 3D HCP 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 600 6 3D HCN 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 700 7 3D HCCH-TOCSY 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 600 8 3D fwHCC-TOCSY-CCH-E.COSY 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 600 9 3D qHCP 300 uM [U-99% 13C; U-99% 15N] CDE1 100% D2O 50 mM KCl 25 mM potassium phosphate 6.2 1 bar 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 800 3 Bruker AVANCE III 700
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH 2.52 Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment Sparky 3.2 Goddard 4 peak picking Sparky 3.2 Goddard