6YOI

Meta-Carborane di-propyl-sulfonamide in complex with CA IX mimic


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.82911.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties
Matthews coefficientSolvent content
2.0640.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.771α = 90
b = 41.11β = 103.85
c = 72.214γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2017-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.240.5696.40.0470.0540.99913.683.7727240717.198
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2793.50.4940.5760.8172.53.765

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT5OGP1.240.5670307210096.440.13410.13350.1552RANDOM14.608
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.86-0.270.330.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.748
r_sphericity_free20.589
r_dihedral_angle_4_deg17.899
r_dihedral_angle_3_deg10.166
r_dihedral_angle_1_deg6.943
r_sphericity_bonded6.085
r_rigid_bond_restr4.655
r_angle_other_deg2.619
r_angle_refined_deg1.568
r_chiral_restr0.099
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.748
r_sphericity_free20.589
r_dihedral_angle_4_deg17.899
r_dihedral_angle_3_deg10.166
r_dihedral_angle_1_deg6.943
r_sphericity_bonded6.085
r_rigid_bond_restr4.655
r_angle_other_deg2.619
r_angle_refined_deg1.568
r_chiral_restr0.099
r_bond_refined_d0.012
r_gen_planes_refined0.01
r_gen_planes_other0.006
r_bond_other_d0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1997
Nucleic Acid Atoms
Solvent Atoms271
Heterogen Atoms27

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
FFTphasing