☰ Navigation Tabs
Crystal structure of FAP R451K mutant in the dark at 100K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YRU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 281 PEG 4000 25-40%, Na citrate 100 mM, spermidine 10mM
Crystal Properties Matthews coefficient Solvent content 2.94 58.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.62 α = 90 b = 102.78 β = 90 c = 155.83 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2018-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.966 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 90 99.5 0.072 0.083 0.998 12.22 4.232 87644 28.854
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.75 99.5 0.853 0.984 0.537 1.52 4.041
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6YRU 1.64 46.401 87633 4341 99.468 0.167 0.1661 0.1765 0.1921 0.2021 22.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.818 -0.26 -0.557
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.961 r_dihedral_angle_4_deg 16.172 r_dihedral_angle_3_deg 14.267 r_dihedral_angle_1_deg 6.959 r_lrange_it 5.612 r_lrange_other 5.522 r_scangle_it 4.761 r_scangle_other 4.76 r_scbond_it 3.233 r_scbond_other 3.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.961 r_dihedral_angle_4_deg 16.172 r_dihedral_angle_3_deg 14.267 r_dihedral_angle_1_deg 6.959 r_lrange_it 5.612 r_lrange_other 5.522 r_scangle_it 4.761 r_scangle_other 4.76 r_scbond_it 3.233 r_scbond_other 3.233 r_mcangle_it 2.387 r_mcangle_other 2.387 r_angle_refined_deg 1.798 r_mcbond_it 1.791 r_mcbond_other 1.785 r_angle_other_deg 1.527 r_symmetry_xyhbond_nbd_refined 0.475 r_nbd_other 0.254 r_nbd_refined 0.207 r_symmetry_nbd_refined 0.2 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4254 Nucleic Acid Atoms Solvent Atoms 365 Heterogen Atoms 106
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing