☰ Navigation Tabs
CLK3 bound with benzothiazole Tg003 (Cpd 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 21% PEG 3350, 0,2M Na/K PO4, 10% Ethylene Glycol
Crystal Properties Matthews coefficient Solvent content 2.95 58.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.057 α = 90 b = 131.599 β = 107.98 c = 83.598 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2017-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50.69 99.8 0.104 0.114 0.045 0.998 11.1 6.3 66435
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.653 0.708 0.271 0.839 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2eu9 2 50.69 63166 3266 99.82 0.186 0.1839 0.1922 0.2269 0.2317 RANDOM 33.782
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.2 -0.08 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.118 r_dihedral_angle_4_deg 18.379 r_dihedral_angle_3_deg 13.977 r_dihedral_angle_1_deg 7.109 r_angle_refined_deg 1.716 r_angle_other_deg 1.383 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.118 r_dihedral_angle_4_deg 18.379 r_dihedral_angle_3_deg 13.977 r_dihedral_angle_1_deg 7.109 r_angle_refined_deg 1.716 r_angle_other_deg 1.383 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5589 Nucleic Acid Atoms Solvent Atoms 534 Heterogen Atoms 123
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing