☰ Navigation Tabs
Structure of a parallel c-myc modified with 5' duplex stem-loop and 3' diagonal snap-back loop
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC aromatic 0.25 mM 0 nucleic acid 90% H2O/10% D2O 10 mM 7.0 1 atm 293 Bruker AVANCE NEO 600 2 2D 1H-1H NOESY 0.62 mM 0 nucleic acid 90% H2O/10% D2O 10 mM 7.0 1 atm 293 Bruker AVANCE NEO 600 3 2D DQF-COSY 0.25 mM 0 nucleic acid 90% H2O/10% D2O 10 mM 7.0 1 atm 293 Bruker AVANCE NEO 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 600
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CcpNmr Analysis 2.4.2 CCPN 2 structure calculation X-PLOR NIH 2.52 Schwieters, Kuszewski, Tjandra and Clore 3 data analysis CcpNmr Analysis 2.4.2 CCPN 4 peak picking CcpNmr Analysis 2.4.2 CCPN 5 processing TopSpin 4.0.7 Bruker Biospin 6 refinement Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman