6ZYC
Solution structure of the C-terminal domain of the vaccinia virus DNA polymerase processivity factor component A20.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 15N-TROSY | 1 mM [U-15N] A20-BAP, 50 mM sodium citrate, 300 mM sodium chloride, 2 mg/L TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 950 |
2 | 2D 13C-HSQC | 1 mM [U-15N] A20-BAP, 50 mM potassium phosphate, 300 mM sodium chloride, 1.2 mM TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 950 |
3 | 3D HNCO | 1 mM [U-15N] A20-BAP, 50 mM sodium citrate, 300 mM sodium chloride, 2 mg/L TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 600 |
4 | 3D HNCACB | 1 mM [U-15N] A20-BAP, 50 mM sodium citrate, 300 mM sodium chloride, 2 mg/L TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 950 |
5 | 3D HCCH-TOCSY | 1 mM [U-15N] A20-BAP, 50 mM potassium phosphate, 300 mM sodium chloride, 1.2 mM TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 850 |
8 | 15N-NOESY | 1 mM [U-15N] A20-BAP, 50 mM sodium citrate, 300 mM sodium chloride, 2 mg/L TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 950 |
7 | 13C-NOESY | 1 mM [U-15N] A20-BAP, 50 mM potassium phosphate, 300 mM sodium chloride, 1.2 mM TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 950 |
6 | 2D-NOESY | 1 mM [U-15N] A20-BAP, 50 mM potassium phosphate, 300 mM sodium chloride, 1.2 mM TCEP | 100% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 950 |
9 | 13C-13C-methyl-NOESY | 1 mM [U-15N] A20-BAP, 50 mM potassium phosphate, 300 mM sodium chloride, 1.2 mM TCEP | 90% H2O/10% D2O | 0.3 M | 6 | 1 atm | 298 | Bruker AVANCE 950 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 950 |
2 | Bruker | AVANCE | 850 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | water refinement | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | peak picking | UNIO | Torsten Herrmann | |
5 | structure calculation | ARIA | Linge, O'Donoghue and Nilges |