☰ Navigation Tabs
Synergistic stabilization of a double mutant in CI2 from an in-cell library screen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7A2E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 40 % (NH4)2SO4, 50 mM Tris-HCl, pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.435 α = 90 b = 68.435 β = 90 c = 52.104 γ = 120
Symmetry Space Group P 6 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS PILATUS 6M-F 2019-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.9763 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.006 59.27 95.4 0.015 1 22.9 32.4 29926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.006 1.069 60.7 0.506 0.498 1.2 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7A2E 1.01 59.27 28501 1426 77.31 0.1504 0.1489 0.181 0.1902 RANDOM 14.761
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.969 r_sphericity_free 27.006 r_dihedral_angle_4_deg 19.654 r_dihedral_angle_3_deg 10.507 r_sphericity_bonded 9.989 r_dihedral_angle_1_deg 6.68 r_rigid_bond_restr 6.574 r_angle_refined_deg 2.516 r_angle_other_deg 1.348 r_chiral_restr 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.969 r_sphericity_free 27.006 r_dihedral_angle_4_deg 19.654 r_dihedral_angle_3_deg 10.507 r_sphericity_bonded 9.989 r_dihedral_angle_1_deg 6.68 r_rigid_bond_restr 6.574 r_angle_refined_deg 2.516 r_angle_other_deg 1.348 r_chiral_restr 0.14 r_bond_refined_d 0.031 r_gen_planes_refined 0.014 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 512 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction