☰ Navigation Tabs
Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 33-(Z)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 24% PEG-3350, 0.2 M NH4-acetate, 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.96 37.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.797 α = 90 b = 47.869 β = 90 c = 61.981 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 32.27 96.1 0.175 0.247 0.173 0.981 3 3.1 34142
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 1.727 2.43 1.708 0.233 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4tw7 1.85 32.27 18470 911 96.803 0.187 0.1827 0.1827 0.2671 0.267 16.591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.848 -0.953 -4.62 -1.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.747 r_dihedral_angle_3_deg 14.725 r_dihedral_angle_4_deg 14.306 r_dihedral_angle_1_deg 7.919 r_lrange_it 2.542 r_lrange_other 2.541 r_mcangle_other 2.224 r_mcangle_it 2.223 r_scangle_it 1.899 r_scangle_other 1.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.747 r_dihedral_angle_3_deg 14.725 r_dihedral_angle_4_deg 14.306 r_dihedral_angle_1_deg 7.919 r_lrange_it 2.542 r_lrange_other 2.541 r_mcangle_other 2.224 r_mcangle_it 2.223 r_scangle_it 1.899 r_scangle_other 1.898 r_mcbond_it 1.749 r_mcbond_other 1.743 r_angle_refined_deg 1.645 r_rigid_bond_restr 1.527 r_scbond_it 1.512 r_scbond_other 1.512 r_angle_other_deg 1.27 r_chiral_restr_other 1.069 r_symmetry_xyhbond_nbd_refined 0.223 r_symmetry_nbd_other 0.187 r_nbd_refined 0.186 r_nbd_other 0.168 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.152 r_symmetry_nbd_refined 0.137 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.051 r_symmetry_xyhbond_nbd_other 0.018 r_bond_refined_d 0.009 r_bond_other_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1878 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement DIALS data collection Aimless data reduction Aimless data scaling PHASER phasing