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Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 56
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 30% PEG-3350, 0.2 M NH4-acetate and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.78 30.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.565 α = 90 b = 47.821 β = 90 c = 61.468 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30.73 95 0.073 0.087 0.046 0.996 10.7 6.2 19573
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 96.1 1.061 1.261 0.675 0.642 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW7 1.67 20.001 11681 565 94.537 0.153 0.1505 0.1985 0.2035 17.831
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.746 0.174 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.871 r_dihedral_angle_4_deg 16.751 r_dihedral_angle_3_deg 14.408 r_dihedral_angle_1_deg 7.454 r_lrange_it 2.981 r_lrange_other 2.95 r_mcangle_it 2.285 r_mcangle_other 2.283 r_scangle_it 2.198 r_scangle_other 2.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.871 r_dihedral_angle_4_deg 16.751 r_dihedral_angle_3_deg 14.408 r_dihedral_angle_1_deg 7.454 r_lrange_it 2.981 r_lrange_other 2.95 r_mcangle_it 2.285 r_mcangle_other 2.283 r_scangle_it 2.198 r_scangle_other 2.196 r_scbond_it 1.724 r_scbond_other 1.723 r_mcbond_other 1.688 r_mcbond_it 1.687 r_angle_refined_deg 1.594 r_angle_other_deg 1.509 r_chiral_restr_other 1.208 r_rigid_bond_restr 0.945 r_nbd_other 0.258 r_symmetry_nbd_refined 0.256 r_nbd_refined 0.194 r_symmetry_nbd_other 0.18 r_nbtor_refined 0.167 r_xyhbond_nbd_refined 0.13 r_symmetry_xyhbond_nbd_refined 0.115 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.054 r_bond_refined_d 0.008 r_bond_other_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 890 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement REFMAC refinement DIALS data collection Aimless data reduction Aimless data scaling PHASER phasing