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Crystal structure of rsFolder2 in its non-fluorescent off-state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5DTZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.22 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.3 α = 90 b = 134.91 β = 105.97 c = 51.66 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2015-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.97 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 48.12 99.8 0.072 0.998 11.3 3.5 116053 18.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.66 99.5 0.807 0.679 1.7 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5dtz 1.63 48.12 114053 2000 99.7 0.1551 0.1544 0.1677 0.1927 0.2007 RANDOM 24.197
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 0.07 1.65 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.858 r_dihedral_angle_1_deg 15.076 r_dihedral_angle_3_deg 14.445 r_dihedral_angle_4_deg 11.667 r_angle_refined_deg 2.01 r_angle_other_deg 1.447 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.858 r_dihedral_angle_1_deg 15.076 r_dihedral_angle_3_deg 14.445 r_dihedral_angle_4_deg 11.667 r_angle_refined_deg 2.01 r_angle_other_deg 1.447 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7422 Nucleic Acid Atoms Solvent Atoms 984 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling REFMAC phasing