Experiment: 7BSM

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7BSB

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH		296	6%(v/v) Tacsimate pH 6.0, 0.1 M MES monohydrate pH 6.0, 25%(w/v) polyethylene glycol 4000

Crystal Properties
Matthews coefficient	Solvent content
2.85	56.9

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 170.359	α = 90
b = 170.359	β = 90
c = 192.499	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-12-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	0.9767	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.8	96.25	100	0.22	0.99	9	13.2		70202

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.8	2.95	100		0.73	1.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	7BSB	2.8	96.25	70117	3494	99.987	0.229	0.2271	0.23	0.2604	0.26	53.106

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.908			-2.908		5.817

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.968
r_dihedral_angle_3_deg	15.779
r_dihedral_angle_4_deg	13.514
r_lrange_other	12.872
r_lrange_it	12.869
r_scangle_other	10.959
r_scangle_it	10.958
r_mcangle_it	9.823
r_mcangle_other	9.822
r_scbond_it	7.926

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.968
r_dihedral_angle_3_deg	15.779
r_dihedral_angle_4_deg	13.514
r_lrange_other	12.872
r_lrange_it	12.869
r_scangle_other	10.959
r_scangle_it	10.958
r_mcangle_it	9.823
r_mcangle_other	9.822
r_scbond_it	7.926
r_scbond_other	7.926
r_dihedral_angle_1_deg	7.685
r_mcbond_other	7.054
r_mcbond_it	7.053
r_angle_other_deg	2.499
r_angle_refined_deg	1.89
r_nbd_other	0.287
r_symmetry_nbd_other	0.227
r_symmetry_xyhbond_nbd_refined	0.213
r_symmetry_nbd_refined	0.211
r_nbd_refined	0.191
r_xyhbond_nbd_refined	0.175
r_nbtor_refined	0.172
r_ncsr_local_group_42	0.118
r_ncsr_local_group_41	0.115
r_ncsr_local_group_66	0.11
r_ncsr_local_group_77	0.108
r_ncsr_local_group_78	0.107
r_ncsr_local_group_51	0.106
r_ncsr_local_group_83	0.106
r_ncsr_local_group_82	0.103
r_ncsr_local_group_44	0.101
r_ncsr_local_group_71	0.101
r_ncsr_local_group_58	0.1
r_ncsr_local_group_65	0.1
r_ncsr_local_group_85	0.1
r_ncsr_local_group_3	0.099
r_ncsr_local_group_8	0.098
r_ncsr_local_group_31	0.098
r_ncsr_local_group_59	0.098
r_ncsr_local_group_72	0.098
r_ncsr_local_group_38	0.097
r_ncsr_local_group_39	0.097
r_ncsr_local_group_84	0.097
r_ncsr_local_group_9	0.096
r_ncsr_local_group_21	0.096
r_ncsr_local_group_40	0.096
r_ncsr_local_group_61	0.096
r_ncsr_local_group_46	0.095
r_ncsr_local_group_50	0.094
r_ncsr_local_group_4	0.093
r_ncsr_local_group_5	0.093
r_ncsr_local_group_32	0.093
r_ncsr_local_group_45	0.093
r_ncsr_local_group_86	0.093
r_ncsr_local_group_15	0.092
r_ncsr_local_group_37	0.092
r_ncsr_local_group_52	0.092
r_ncsr_local_group_20	0.091
r_ncsr_local_group_81	0.091
r_ncsr_local_group_10	0.089
r_ncsr_local_group_43	0.089
r_ncsr_local_group_2	0.088
r_ncsr_local_group_6	0.088
r_ncsr_local_group_22	0.087
r_ncsr_local_group_67	0.087
r_ncsr_local_group_68	0.087
r_ncsr_local_group_80	0.087
r_ncsr_local_group_88	0.087
r_ncsr_local_group_11	0.086
r_ncsr_local_group_56	0.086
r_ncsr_local_group_19	0.085
r_ncsr_local_group_29	0.085
r_ncsr_local_group_60	0.085
r_ncsr_local_group_1	0.084
r_ncsr_local_group_74	0.084
r_ncsr_local_group_79	0.084
r_ncsr_local_group_13	0.083
r_ncsr_local_group_23	0.083
r_ncsr_local_group_26	0.083
r_ncsr_local_group_33	0.083
r_ncsr_local_group_63	0.083
r_ncsr_local_group_73	0.083
r_ncsr_local_group_18	0.081
r_ncsr_local_group_57	0.081
r_symmetry_nbtor_other	0.08
r_ncsr_local_group_12	0.08
r_ncsr_local_group_30	0.08
r_ncsr_local_group_34	0.08
r_ncsr_local_group_49	0.08
r_ncsr_local_group_76	0.08
r_ncsr_local_group_70	0.079
r_ncsr_local_group_89	0.079
r_ncsr_local_group_28	0.078
r_ncsr_local_group_47	0.078
r_ncsr_local_group_62	0.078
r_ncsr_local_group_64	0.078
r_ncsr_local_group_75	0.078
r_ncsr_local_group_87	0.078
r_ncsr_local_group_16	0.077
r_ncsr_local_group_69	0.077
r_ncsr_local_group_17	0.076
r_ncsr_local_group_53	0.076
r_chiral_restr	0.075
r_symmetry_xyhbond_nbd_other	0.075
r_ncsr_local_group_90	0.075
r_ncsr_local_group_24	0.074
r_ncsr_local_group_25	0.074
r_ncsr_local_group_27	0.074
r_ncsr_local_group_35	0.074
r_ncsr_local_group_48	0.074
r_ncsr_local_group_54	0.074
r_ncsr_local_group_7	0.072
r_ncsr_local_group_14	0.071
r_ncsr_local_group_55	0.071
r_ncsr_local_group_36	0.07
r_ncsr_local_group_91	0.067
r_bond_other_d	0.037
r_chiral_restr_other	0.022
r_gen_planes_other	0.016
r_bond_refined_d	0.014
r_gen_planes_refined	0.009