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BACE-1 in complex with compound #6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UVP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 100 mM sodium cacodylate pH 7.4, 12% PEG 8K, 200 mM ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.59 52.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.156 α = 90 b = 89.489 β = 90 c = 131.474 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2011-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 20 98.6 0.101 8.9 7.2 275061
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.32 94 0.726 2.5 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UVP 1.25 19.93 261180 13880 98.43 0.1411 0.1398 0.1495 0.1657 0.1723 RANDOM 16.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.59 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.43 r_sphericity_free 19.027 r_dihedral_angle_4_deg 16.97 r_dihedral_angle_3_deg 11.08 r_sphericity_bonded 10.155 r_dihedral_angle_1_deg 6.95 r_rigid_bond_restr 2.577 r_angle_refined_deg 1.471 r_chiral_restr 0.093 r_gen_planes_refined 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.43 r_sphericity_free 19.027 r_dihedral_angle_4_deg 16.97 r_dihedral_angle_3_deg 11.08 r_sphericity_bonded 10.155 r_dihedral_angle_1_deg 6.95 r_rigid_bond_restr 2.577 r_angle_refined_deg 1.471 r_chiral_restr 0.093 r_gen_planes_refined 0.008 r_bond_refined_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6116 Nucleic Acid Atoms Solvent Atoms 1186 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling REFMAC phasing