☰ Navigation Tabs
SDE2 SAP domain apo structure
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCA 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 2 3DHNCACO 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 3 3D HN(CO)CA 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 4 3D HNCO 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 5 3D HNCACB 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 6 3D HN(COCA)CB 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 7 3D C(CO)NH 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 850 8 3D 1H-15N TOCSY 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 9 2D 1H-13C HSQC 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 700 10 2D 1H-15N HSQC 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 850 11 3D 1H-15N NOESY 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 850 12 3D 1H-13C NOESY 300 uM [U-100% 13C; U-100% 15N] SDE2-DNA Binding protein 90% H2O/10% D2O 100 mM 6.5 1 atm 298 Bruker AVANCE III HD 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 700 2 Bruker AVANCE III HD 850
NMR Refinement Method Details Software molecular dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis NMRFAM-SPARKY WoongHe, Lee 2 structure calculation PONDEROSA Woonghe, Lee 3 collection TopSpin Bruker Biospin 4 chemical shift assignment I-PINE Lee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley 5 refinement ARIA Fabrice Allain, Fabien Mareuil, Herve Menager, Michael Nilges, Benjamin Bardiaux 6 peak picking NMRFAM-SPARKY Woonghee, Lee