X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52790.3 M Ammonium Acetate 0.1 M Bis-TRIS pH 5.5 25% w/v PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.227582544.81749

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.321α = 109.039
b = 78.212β = 106.865
c = 83.456γ = 104.766
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3572.01493.30.99511.12.1234884
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.370.906

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUED_12921082231.3572.0142348831184293.2530.1840.18320.209514.291
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.979-2.0351.372-2.484-0.188-3.494
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.847
r_dihedral_angle_4_deg17.957
r_dihedral_angle_3_deg12.352
r_dihedral_angle_1_deg5.625
r_lrange_it4.149
r_lrange_other4.149
r_scangle_it3.122
r_scangle_other3.122
r_angle_other_deg2.373
r_scbond_it2.156
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.847
r_dihedral_angle_4_deg17.957
r_dihedral_angle_3_deg12.352
r_dihedral_angle_1_deg5.625
r_lrange_it4.149
r_lrange_other4.149
r_scangle_it3.122
r_scangle_other3.122
r_angle_other_deg2.373
r_scbond_it2.156
r_scbond_other2.156
r_mcangle_other1.874
r_mcangle_it1.873
r_angle_refined_deg1.833
r_mcbond_it1.32
r_mcbond_other1.312
r_nbd_other0.337
r_symmetry_nbd_refined0.329
r_nbd_refined0.225
r_symmetry_nbd_other0.205
r_nbtor_refined0.178
r_symmetry_xyhbond_nbd_refined0.132
r_xyhbond_nbd_refined0.127
r_chiral_restr0.099
r_symmetry_nbtor_other0.071
r_bond_other_d0.036
r_gen_planes_other0.016
r_bond_refined_d0.014
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8804
Nucleic Acid Atoms
Solvent Atoms1464
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
autoPROCdata scaling
MOLREPphasing