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Glutathione-S-transferase GliG mutant K127G in complex with oxidized glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.1 M tris pH 8.5, 29 % PEG6000
Crystal Properties Matthews coefficient Solvent content 2.58 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.26 α = 90 b = 126.26 β = 90 c = 64.89 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 45 95.8 0.055 12.3 4.1 90330
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 0.615 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7NC3 1.5 30 85802 4516 95.81 0.145 0.1431 0.1441 0.1793 0.1807 RANDOM 27.234
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 1 2 -6.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.45 r_dihedral_angle_4_deg 15.955 r_dihedral_angle_3_deg 12.811 r_dihedral_angle_1_deg 6.08 r_rigid_bond_restr 3.363 r_angle_other_deg 1.375 r_angle_refined_deg 1.367 r_chiral_restr 0.073 r_gen_planes_refined 0.007 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.45 r_dihedral_angle_4_deg 15.955 r_dihedral_angle_3_deg 12.811 r_dihedral_angle_1_deg 6.08 r_rigid_bond_restr 3.363 r_angle_other_deg 1.375 r_angle_refined_deg 1.367 r_chiral_restr 0.073 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3860 Nucleic Acid Atoms Solvent Atoms 632 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing