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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH oxabicyclo(hexan-6-yl)-N2-methyl-6-((S)-1-phenylethyl)pyridine-2,4-dicarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.35 47.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.17 α = 90 b = 53.167 β = 90 c = 32.511 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.92819 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 43.01 99.4 0.057 0.997 12.3 4.5 32074
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.45 99.4 0.419 0.866 3.1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.3 43.01 32036 1561 99.118 0.176 0.1748 0.176 0.1919 0.1944 20.327
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.457 -0.341 0.798
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.294 r_dihedral_angle_4_deg 23.713 r_dihedral_angle_3_deg 12.174 r_lrange_it 6.037 r_lrange_other 6.034 r_dihedral_angle_1_deg 4.577 r_scangle_it 2.5 r_scangle_other 2.498 r_mcangle_other 1.842 r_mcangle_it 1.841
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.294 r_dihedral_angle_4_deg 23.713 r_dihedral_angle_3_deg 12.174 r_lrange_it 6.037 r_lrange_other 6.034 r_dihedral_angle_1_deg 4.577 r_scangle_it 2.5 r_scangle_other 2.498 r_mcangle_other 1.842 r_mcangle_it 1.841 r_scbond_it 1.482 r_scbond_other 1.48 r_angle_other_deg 1.228 r_angle_refined_deg 1.171 r_mcbond_it 1.069 r_mcbond_other 1.06 r_nbd_refined 0.19 r_nbtor_refined 0.159 r_symmetry_nbd_other 0.157 r_nbd_other 0.119 r_symmetry_nbd_refined 0.117 r_symmetry_xyhbond_nbd_refined 0.101 r_xyhbond_nbd_refined 0.082 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.063 r_gen_planes_refined 0.004 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 926 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling