☰ Navigation Tabs
C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 6-((S)-hydroxy(phenyl)methyl)-N2-methyl-N4-((1S,2S)-2-methylcyclopropyl)pyridine-2,4-dicarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 of 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.042 α = 90 b = 52.421 β = 90 c = 32.005 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 29.69 94.4 0.023 0.999 28.7 2.9 16182
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.69 78.9 0.679 6.9 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.6 29.69 15545 784 90.859 0.164 0.1627 0.1729 0.1927 0.2024 20.657
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.044 -0.027 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.706 r_dihedral_angle_4_deg 19.542 r_dihedral_angle_3_deg 11.538 r_lrange_it 5.808 r_lrange_other 5.805 r_dihedral_angle_1_deg 4.901 r_scangle_it 2.854 r_scangle_other 2.852 r_mcangle_other 1.969 r_mcangle_it 1.965
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.706 r_dihedral_angle_4_deg 19.542 r_dihedral_angle_3_deg 11.538 r_lrange_it 5.808 r_lrange_other 5.805 r_dihedral_angle_1_deg 4.901 r_scangle_it 2.854 r_scangle_other 2.852 r_mcangle_other 1.969 r_mcangle_it 1.965 r_scbond_it 1.704 r_scbond_other 1.703 r_angle_other_deg 1.265 r_angle_refined_deg 1.165 r_mcbond_it 1.152 r_mcbond_other 1.131 r_nbd_refined 0.197 r_nbtor_refined 0.167 r_symmetry_nbd_other 0.165 r_nbd_other 0.134 r_symmetry_nbd_refined 0.116 r_xyhbond_nbd_refined 0.112 r_symmetry_xyhbond_nbd_refined 0.092 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.06 r_symmetry_xyhbond_nbd_other 0.032 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 926 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling