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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N4-((1R,5S,6r)-3-oxabicyclo[3.1.0]hexan-6-yl)-6-((S)-methoxy(phenyl)methyl)-N2-methylpyridine-2,4-dicarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.26 45.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.101 α = 90 b = 52.529 β = 90 c = 32.058 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 52.53 94.2 0.016 0.997 43.1 2.9 15547
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 74.1 0.046 0.975 16.4 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.603 42.456 15452 741 92.984 0.16 0.1578 0.1632 0.1944 0.1938 17.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.345 -0.016 0.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.411 r_dihedral_angle_4_deg 19.783 r_dihedral_angle_3_deg 11.668 r_lrange_it 5.815 r_lrange_other 5.813 r_dihedral_angle_1_deg 4.801 r_scangle_it 2.371 r_scangle_other 2.37 r_mcangle_other 2.03 r_mcangle_it 2.028
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.411 r_dihedral_angle_4_deg 19.783 r_dihedral_angle_3_deg 11.668 r_lrange_it 5.815 r_lrange_other 5.813 r_dihedral_angle_1_deg 4.801 r_scangle_it 2.371 r_scangle_other 2.37 r_mcangle_other 2.03 r_mcangle_it 2.028 r_scbond_it 1.402 r_scbond_other 1.4 r_angle_other_deg 1.26 r_angle_refined_deg 1.173 r_mcbond_it 1.148 r_mcbond_other 1.131 r_nbd_refined 0.191 r_nbtor_refined 0.168 r_symmetry_nbd_other 0.161 r_nbd_other 0.142 r_symmetry_nbd_refined 0.101 r_xyhbond_nbd_refined 0.097 r_symmetry_xyhbond_nbd_refined 0.09 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.061 r_symmetry_xyhbond_nbd_other 0.051 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 928 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling