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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 2-benzyl-N-cyclopropyl-6-(1-methyl-1H-1,2,3-triazol-4-yl)isonicotinamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.759 α = 90 b = 52.443 β = 90 c = 32.07 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 72.02 95.4 0.023 0.998 25.3 2.7 15827
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 79.2 0.1 0.817 7.8 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.602 29.279 15797 784 95.571 0.154 0.1528 0.1555 0.1783 0.1826 18.151
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.466 -0.183 0.649
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.345 r_dihedral_angle_4_deg 25.217 r_dihedral_angle_3_deg 12.167 r_lrange_it 5.677 r_lrange_other 5.423 r_dihedral_angle_1_deg 4.643 r_scangle_it 2.829 r_scangle_other 2.827 r_mcangle_other 2.04 r_mcangle_it 2.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.345 r_dihedral_angle_4_deg 25.217 r_dihedral_angle_3_deg 12.167 r_lrange_it 5.677 r_lrange_other 5.423 r_dihedral_angle_1_deg 4.643 r_scangle_it 2.829 r_scangle_other 2.827 r_mcangle_other 2.04 r_mcangle_it 2.029 r_scbond_it 1.674 r_scbond_other 1.672 r_angle_other_deg 1.253 r_mcbond_it 1.179 r_angle_refined_deg 1.176 r_mcbond_other 1.128 r_nbd_refined 0.198 r_symmetry_nbd_refined 0.193 r_nbd_other 0.169 r_nbtor_refined 0.168 r_symmetry_nbd_other 0.163 r_xyhbond_nbd_refined 0.125 r_symmetry_xyhbond_nbd_refined 0.109 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.063 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 910 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling