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cryoEM structure of 2C9-sMAC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H03 experimental model PDB 6H04 experimental model PDB 4A5W experimental model PDB 2WCY experimental model PDB 6CXO
Refinement RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 86.067 r_mcbond_it 68.254 r_dihedral_angle_2_deg 33.562 r_dihedral_angle_4_deg 18.096 r_dihedral_angle_3_deg 11.839 r_dihedral_angle_1_deg 9.651 r_angle_refined_deg 2.006 r_chiral_restr 0.112 r_gen_planes_refined 0.015 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 86.067 r_mcbond_it 68.254 r_dihedral_angle_2_deg 33.562 r_dihedral_angle_4_deg 18.096 r_dihedral_angle_3_deg 11.839 r_dihedral_angle_1_deg 9.651 r_angle_refined_deg 2.006 r_chiral_restr 0.112 r_gen_planes_refined 0.015 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 142499 Reported Resolution (Å) 3.27 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6H03, 6H04, 4A5W, 2WCY, 6CXO) Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 QUANTUM (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4-1 MODEL FITTING UCSF Chimera X MODEL FITTING Coot 9.1 INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 RECONSTRUCTION RELION 3.1 MODEL REFINEMENT ISOLDE MODEL REFINEMENT Coot 9.1 MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION