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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N4-hydroxycyclohexyl-N2-methyl-5-phenylethyl-furan-2,4-dicarboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.26 45.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.007 α = 90 b = 52.532 β = 90 c = 32.14 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2019-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 42.44 97.5 0.079 0.997 11.5 3.4 12247
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.86 99.6 0.467 0.809 2.7 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE in house structure 1.762 32.14 12205 617 96.788 0.158 0.1561 0.1703 0.1893 0.2069 20.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.192 -0.541 0.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.218 r_dihedral_angle_4_deg 20.209 r_dihedral_angle_3_deg 12.477 r_lrange_it 7.286 r_lrange_other 6.308 r_dihedral_angle_1_deg 5.184 r_scangle_it 3.106 r_scangle_other 3.104 r_mcangle_other 2.476 r_mcangle_it 2.471
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.218 r_dihedral_angle_4_deg 20.209 r_dihedral_angle_3_deg 12.477 r_lrange_it 7.286 r_lrange_other 6.308 r_dihedral_angle_1_deg 5.184 r_scangle_it 3.106 r_scangle_other 3.104 r_mcangle_other 2.476 r_mcangle_it 2.471 r_scbond_it 1.833 r_scbond_other 1.831 r_mcbond_it 1.418 r_mcbond_other 1.384 r_angle_other_deg 1.226 r_angle_refined_deg 1.187 r_nbd_refined 0.189 r_nbd_other 0.177 r_symmetry_nbd_other 0.167 r_xyhbond_nbd_refined 0.165 r_nbtor_refined 0.163 r_symmetry_nbd_refined 0.148 r_symmetry_xyhbond_nbd_refined 0.119 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.064 r_symmetry_xyhbond_nbd_other 0.028 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 919 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling