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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-N-(2-phenylpropyl)-1,6-dihydropyridine-3-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.23 44.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.647 α = 90 b = 52.388 β = 90 c = 31.987 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.29 94.6 0.017 0.996 33.1 2.4 15516
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 71 0.066 0.924 10.2 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE in house structure 1.602 32.007 15402 741 93.589 0.156 0.1549 0.1693 0.1832 0.194 20.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.078 -0.291 0.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.623 r_dihedral_angle_4_deg 21.243 r_dihedral_angle_3_deg 12.41 r_lrange_it 5.73 r_lrange_other 5.728 r_dihedral_angle_1_deg 4.755 r_scangle_it 2.855 r_scangle_other 2.854 r_mcangle_other 1.877 r_mcangle_it 1.873
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.623 r_dihedral_angle_4_deg 21.243 r_dihedral_angle_3_deg 12.41 r_lrange_it 5.73 r_lrange_other 5.728 r_dihedral_angle_1_deg 4.755 r_scangle_it 2.855 r_scangle_other 2.854 r_mcangle_other 1.877 r_mcangle_it 1.873 r_scbond_it 1.752 r_scbond_other 1.751 r_angle_other_deg 1.224 r_angle_refined_deg 1.176 r_mcbond_it 1.093 r_mcbond_other 1.073 r_nbd_refined 0.194 r_nbtor_refined 0.166 r_symmetry_nbd_other 0.165 r_nbd_other 0.146 r_symmetry_nbd_refined 0.14 r_xyhbond_nbd_refined 0.103 r_symmetry_xyhbond_nbd_refined 0.088 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.061 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 923 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling