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Carbonic anhydrase II in complex with Hit3 (MH57)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PO6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.08 40.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.23 α = 90 b = 41.3 β = 104.4 c = 72.22 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.98 35.56 89.5 0.038 0.044 0.999 15.13 3.751 116713 13.028
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.06 62.4 0.491 0.586 0.76 2 3.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3PO6 0.98 35.56 116661 2381 85.51 0.1212 0.1209 0.1218 0.1363 0.1379 RANDOM 13.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -0.07 -0.21 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.085 r_dihedral_angle_4_deg 24.73 r_dihedral_angle_3_deg 11.477 r_dihedral_angle_1_deg 7.026 r_rigid_bond_restr 1.93 r_angle_other_deg 1.815 r_angle_refined_deg 1.735 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.085 r_dihedral_angle_4_deg 24.73 r_dihedral_angle_3_deg 11.477 r_dihedral_angle_1_deg 7.026 r_rigid_bond_restr 1.93 r_angle_other_deg 1.815 r_angle_refined_deg 1.735 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2028 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 21
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction FFT phasing