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Carbonic anhydrase II in complex with Hit3-t2 (MH174)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5PO6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.09 41.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.233 α = 90 b = 41.269 β = 104.45 c = 72.518 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 35.58 97.4 0.058 0.068 0.999 11.19 3.59 84270 15.809
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.22 93.1 0.921 1.097 0.635 1.31 3.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5PO6 1.15 35.58 81776 2529 97.43 0.1443 0.1432 0.1451 0.1805 0.1821 RANDOM 16.202
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.13 -0.43 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.777 r_dihedral_angle_4_deg 24.984 r_dihedral_angle_3_deg 11.934 r_dihedral_angle_1_deg 7.067 r_rigid_bond_restr 2.76 r_angle_refined_deg 1.807 r_angle_other_deg 1.528 r_chiral_restr 0.106 r_bond_refined_d 0.012 r_gen_planes_refined 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.777 r_dihedral_angle_4_deg 24.984 r_dihedral_angle_3_deg 11.934 r_dihedral_angle_1_deg 7.067 r_rigid_bond_restr 2.76 r_angle_refined_deg 1.807 r_angle_other_deg 1.528 r_chiral_restr 0.106 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2025 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 36
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction FFT phasing