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FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 38.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A4C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.7 291 0.185M ammonium sulfate, 20% v/v ethylene glycol, 17% w/v PEG 8000, 0.1M PCPT
Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 206.26 α = 90 b = 57.56 β = 107.22 c = 65.79 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9159 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 98.51 97.4 0.042 0.049 0.026 0.998 14.1 3.6 77609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.75 96.8 0.969 0.737 0.707 1.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5A4C 1.71 98.507 77609 3823 97.159 0.211 0.2088 0.2089 0.2442 0.2449 39.414
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.737 -1.578 3.631 -0.768
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.554 r_dihedral_angle_3_deg 13.152 r_dihedral_angle_4_deg 12.979 r_lrange_it 7.059 r_lrange_other 7.058 r_dihedral_angle_1_deg 6.237 r_scangle_it 4.812 r_scangle_other 4.812 r_mcangle_it 3.757 r_mcangle_other 3.756
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.554 r_dihedral_angle_3_deg 13.152 r_dihedral_angle_4_deg 12.979 r_lrange_it 7.059 r_lrange_other 7.058 r_dihedral_angle_1_deg 6.237 r_scangle_it 4.812 r_scangle_other 4.812 r_mcangle_it 3.757 r_mcangle_other 3.756 r_scbond_it 3.1 r_scbond_other 3.094 r_mcbond_other 2.624 r_mcbond_it 2.623 r_angle_refined_deg 1.383 r_angle_other_deg 1.296 r_symmetry_nbd_refined 0.211 r_nbd_refined 0.207 r_nbd_other 0.183 r_symmetry_nbd_other 0.176 r_nbtor_refined 0.162 r_xyhbond_nbd_refined 0.152 r_symmetry_xyhbond_nbd_refined 0.098 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4516 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 113
Software Software Software Name Purpose xia2 data reduction Aimless data scaling PHASER phasing REFMAC refinement