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FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 34.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A4C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.7 291 0.185M ammonium sulfate, 20% v/v ethylene glycol, 17% w/v PEG 8000, 0.1M PCPT
Crystal Properties Matthews coefficient Solvent content 2.67 53.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 207.3 α = 90 b = 57.51 β = 107.44 c = 65.97 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9159 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 22.01 99.2 0.03 0.035 0.024 0.999 16.7 3.4 66115
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.87 0.836 1.033 0.598 0.688
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5A4C 1.82 22.01 66113 3148 99.074 0.201 0.1995 0.1997 0.2412 0.2418 44.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.327 -1.948 4.434 -1.573
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.91 r_dihedral_angle_4_deg 16.331 r_dihedral_angle_3_deg 13.146 r_lrange_it 8.064 r_lrange_other 8.063 r_dihedral_angle_1_deg 6.336 r_scangle_it 5.566 r_scangle_other 5.566 r_mcangle_it 4.084 r_mcangle_other 4.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.91 r_dihedral_angle_4_deg 16.331 r_dihedral_angle_3_deg 13.146 r_lrange_it 8.064 r_lrange_other 8.063 r_dihedral_angle_1_deg 6.336 r_scangle_it 5.566 r_scangle_other 5.566 r_mcangle_it 4.084 r_mcangle_other 4.083 r_scbond_it 3.69 r_scbond_other 3.69 r_mcbond_other 2.958 r_mcbond_it 2.957 r_angle_refined_deg 1.439 r_angle_other_deg 1.269 r_nbd_refined 0.203 r_symmetry_nbd_other 0.176 r_symmetry_nbd_refined 0.164 r_nbd_other 0.162 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.138 r_symmetry_xyhbond_nbd_refined 0.108 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.064 r_symmetry_xyhbond_nbd_other 0.02 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4419 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 110
Software Software Software Name Purpose xia2 data reduction Aimless data scaling PHASER phasing REFMAC refinement