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Structure of the V. vulnificus ExoY-G-actin-profilin complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6NBW
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.218 f_angle_d 1.022 f_chiral_restr 0.052 f_plane_restr 0.006 f_bond_d 0.005
Sample Structure of the V. vulnificus ExoY-G-actin-profilin complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 342081 Reported Resolution (Å) 3.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6NBW, 6NBW) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND MODEL FITTING ISOLDE INITIAL EULER ASSIGNMENT SPHIRE FINAL EULER ASSIGNMENT SPHIRE RECONSTRUCTION SPHIRE MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1252333