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Evolved unspecific peroxygenase with A77L mutation in complex with tetradecane
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 1.55M sodium potassium phospate pH 5.6; 3% MPD
Soaking: 20 mM, 3 hours, cryoprotected with 25% glycerol
Crystal Properties Matthews coefficient Solvent content 2.31 46.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.172 α = 90 b = 57.996 β = 110.08 c = 60.863 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB MIRRORS 2020-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 48.11 99.8 0.113 0.124 0.048 13.6 6.5 53317
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 98.5 0.465 0.508 0.202 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5OXU 1.5 48.11 50611 2686 99.82 0.1504 0.1497 0.1499 0.1639 0.1643 RANDOM 12.968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.15 -0.49 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.18 r_dihedral_angle_4_deg 19.387 r_dihedral_angle_3_deg 12.266 r_dihedral_angle_1_deg 6.273 r_angle_other_deg 1.499 r_angle_refined_deg 1.48 r_chiral_restr 0.072 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.18 r_dihedral_angle_4_deg 19.387 r_dihedral_angle_3_deg 12.266 r_dihedral_angle_1_deg 6.273 r_angle_other_deg 1.499 r_angle_refined_deg 1.48 r_chiral_restr 0.072 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2517 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling MOLREP phasing