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Evolved unspecific peroxygenase with A77L mutation in complex with lauric acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 1.6M sodium potassium phosphate pH 5.6, 3% MPD
Soaking: 50 mM lauric acid, 1h30, cryoprotected with 25% glycerol
Crystal Properties Matthews coefficient Solvent content 2.35 47.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.088 α = 90 b = 57.783 β = 109.5 c = 60.859 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB MIRRORS 2020-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 48.2 97.6 0.124 0.139 0.061 13.4 5.6 27775
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 91.2 0.575 0.636 0.266 3.1 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5OXU 1.85 48.16 24908 1311 91.7 0.2488 0.2473 0.2554 0.2773 0.2846 RANDOM 16.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 0.86 -2 1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.319 r_dihedral_angle_4_deg 15.623 r_dihedral_angle_3_deg 13.255 r_dihedral_angle_1_deg 6.614 r_angle_refined_deg 1.462 r_angle_other_deg 1.404 r_chiral_restr 0.069 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.319 r_dihedral_angle_4_deg 15.623 r_dihedral_angle_3_deg 13.255 r_dihedral_angle_1_deg 6.614 r_angle_refined_deg 1.462 r_angle_other_deg 1.404 r_chiral_restr 0.069 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2517 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 126
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling MOLREP phasing