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Bovine Trypsin co-crystallized with V(IV)OSO4 and pic
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C1P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG4K; 0.2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 1.99 38.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.522 α = 90 b = 54.522 β = 90 c = 108.199 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 1.04 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.09 41.22 100 0.995 8.2 5.4 78462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.09 1.11 0.761 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1C1P 1.09 41.22 74447 3945 99.95 0.11262 0.11141 0.1362 0.161 RANDOM 15.741
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.02 -0.05 0.15
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.937 r_dihedral_angle_2_deg 37.838 r_dihedral_angle_4_deg 18.916 r_sphericity_bonded 11.41 r_dihedral_angle_3_deg 10.388 r_dihedral_angle_1_deg 6.689 r_long_range_B_other 4.719 r_long_range_B_refined 4.696 r_rigid_bond_restr 4.437 r_scangle_other 2.548
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.937 r_dihedral_angle_2_deg 37.838 r_dihedral_angle_4_deg 18.916 r_sphericity_bonded 11.41 r_dihedral_angle_3_deg 10.388 r_dihedral_angle_1_deg 6.689 r_long_range_B_other 4.719 r_long_range_B_refined 4.696 r_rigid_bond_restr 4.437 r_scangle_other 2.548 r_scbond_it 2.164 r_scbond_other 2.149 r_angle_refined_deg 1.813 r_mcangle_it 1.582 r_mcangle_other 1.582 r_mcbond_other 1.256 r_mcbond_it 1.255 r_angle_other_deg 0.897 r_chiral_restr 0.112 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing