☰ Navigation Tabs
LIPIDIC CUBIC PHASE SERIAL FEMTOSECOND CRYSTALLOGRAPHY STRUCTURE OF A PHOTOSYNTHETIC REACTION CENTRE
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NJ4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 This LCP crystallization was performed in wells with 200uL precipitant and 20uL LCP+protein.
Crystal Properties Matthews coefficient Solvent content 3.65 66.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.66 α = 90 b = 125.13 β = 90 c = 182.38 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL PSI JUNGFRAU 16M 2019-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SwissFEL ARAMIS BEAMLINE ESA 1.102 SwissFEL ARAMIS ESA
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 injection
Data Reduction Diffraction ID Frames Indexed Crystal Hits Frames Indexed Latices Merged 1 160275 260392 160275
Injection Diffraction ID Description Flow Rate Injector Diameter Injection Power Injector Nozzle Filter Size Carrier Solvent 1 0.047 (µl/min) undefined (µm)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 23.702 100 0.995 9.6 11.888 92545
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.27 0.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5NJ4 2.25 23.702 92515 4602 99.856 0.169 0.1678 0.1771 0.2028 0.2076 48.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.613 1.99 -2.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.062 r_dihedral_angle_4_deg 19.753 r_dihedral_angle_other_3_deg 16.304 r_dihedral_angle_3_deg 15.84 r_lrange_it 7.358 r_lrange_other 7.358 r_dihedral_angle_1_deg 6.581 r_scangle_it 5.594 r_scangle_other 5.594 r_mcangle_it 4.372
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.062 r_dihedral_angle_4_deg 19.753 r_dihedral_angle_other_3_deg 16.304 r_dihedral_angle_3_deg 15.84 r_lrange_it 7.358 r_lrange_other 7.358 r_dihedral_angle_1_deg 6.581 r_scangle_it 5.594 r_scangle_other 5.594 r_mcangle_it 4.372 r_mcangle_other 4.372 r_scbond_it 3.515 r_scbond_other 3.514 r_mcbond_it 2.873 r_mcbond_other 2.871 r_angle_refined_deg 2.13 r_angle_other_deg 1.203 r_nbd_refined 0.195 r_symmetry_nbd_other 0.176 r_nbtor_refined 0.168 r_nbd_other 0.157 r_xyhbond_nbd_refined 0.143 r_symmetry_nbd_refined 0.098 r_symmetry_xyhbond_nbd_other 0.086 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.074 r_symmetry_xyhbond_nbd_refined 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9263 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 1022
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling PHASER phasing