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TTBK1 kinase domain in complex with inhibitor 29
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BTM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 27% PEG 4000, 200mM NH4SO4, 100 mM Na Citrate pH5.6 and 10 mM TCEP
Crystal Properties Matthews coefficient Solvent content 5.54 77.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.12 α = 90 b = 108.463 β = 94.512 c = 110.314 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 48.69 99.5 0.992 5 3.4 36393
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.873 99.78 0.441
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4BTM 2.8 48.686 36393 1887 99.47 0.201 0.2 0.1999 0.2285 0.2286 68.455
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.068 0.155 0.196 -0.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.419 r_dihedral_angle_3_deg 18.011 r_dihedral_angle_4_deg 15.958 r_lrange_it 8.833 r_lrange_other 8.832 r_dihedral_angle_1_deg 6.522 r_scangle_it 4.712 r_scangle_other 4.711 r_mcangle_it 3.915 r_scbond_it 2.788
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.419 r_dihedral_angle_3_deg 18.011 r_dihedral_angle_4_deg 15.958 r_lrange_it 8.833 r_lrange_other 8.832 r_dihedral_angle_1_deg 6.522 r_scangle_it 4.712 r_scangle_other 4.711 r_mcangle_it 3.915 r_scbond_it 2.788 r_scbond_other 2.787 r_mcbond_it 2.267 r_angle_refined_deg 0.988 r_nbtor_refined 0.312 r_angle_other_deg 0.283 r_symmetry_xyhbond_nbd_refined 0.228 r_symmetry_nbd_refined 0.224 r_nbd_other 0.219 r_nbd_refined 0.215 r_symmetry_nbd_other 0.17 r_xyhbond_nbd_refined 0.161 r_symmetry_nbtor_other 0.111 r_chiral_restr 0.086 r_bond_other_d 0.006 r_bond_refined_d 0.003 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4765 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing