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CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT L259V COMPLEXED WITH FE, NADH, AND GLYCEROL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 295.15 50.64mM Sodium acetate trihydrate, pH 4.5, 15%w/v PEG 3350, 200mM Sodium Formate
Crystal Properties Matthews coefficient Solvent content 2.43 49.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.78 α = 90 b = 55.36 β = 103.67 c = 107.69 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2021-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9999 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 51.661 98.9 0.153 0.971 7.4 3.14 53704 18.366
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.2 0.752 0.414 2.4 3.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1RRM 2 51.661 53690 2602 98.78 0.188 0.1862 0.1862 0.2271 0.2272 20.391
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.601 -1.058 1.538 1.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.93 r_dihedral_angle_4_deg 15.334 r_dihedral_angle_3_deg 13.688 r_dihedral_angle_1_deg 7.366 r_lrange_it 3.638 r_lrange_other 3.637 r_scangle_it 2.706 r_scangle_other 2.705 r_mcangle_it 1.664 r_mcangle_other 1.664
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.93 r_dihedral_angle_4_deg 15.334 r_dihedral_angle_3_deg 13.688 r_dihedral_angle_1_deg 7.366 r_lrange_it 3.638 r_lrange_other 3.637 r_scangle_it 2.706 r_scangle_other 2.705 r_mcangle_it 1.664 r_mcangle_other 1.664 r_scbond_it 1.656 r_scbond_other 1.656 r_angle_refined_deg 1.382 r_angle_other_deg 1.265 r_mcbond_it 1.046 r_mcbond_other 1.046 r_symmetry_nbd_refined 0.295 r_symmetry_xyhbond_nbd_refined 0.227 r_nbd_other 0.196 r_nbd_refined 0.194 r_symmetry_nbd_other 0.173 r_nbtor_refined 0.148 r_xyhbond_nbd_refined 0.13 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.066 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5692 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing