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rsKiiro pump probe structure by TR-SFX
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OQE 5OQE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 0.2 M LITHIUM SULFATE 0.1 M TRIS-CL PH 8.5 23-30% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.28 45.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.34 α = 90 b = 74.01 β = 90 c = 78.62 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL CS-PAD CXI-1 2018-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SLAC LCLS BEAMLINE CXI 1.305 SLAC LCLS CXI
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 injection
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.31 19 100 0.99 0.1219 4.566 157 51252 19.87
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.31 1.34 0.05 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5OQE 1.5 11.99 35571 1863 99.74 0.34352 0.34243 0.2309 0.36425 0.2381 RANDOM 15.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.3 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.688 r_dihedral_angle_4_deg 23.142 r_dihedral_angle_3_deg 16.638 r_dihedral_angle_1_deg 7.497 r_long_range_B_refined 6.166 r_long_range_B_other 5.84 r_scangle_other 2.418 r_angle_refined_deg 1.733 r_mcangle_other 1.692 r_mcangle_it 1.688
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.688 r_dihedral_angle_4_deg 23.142 r_dihedral_angle_3_deg 16.638 r_dihedral_angle_1_deg 7.497 r_long_range_B_refined 6.166 r_long_range_B_other 5.84 r_scangle_other 2.418 r_angle_refined_deg 1.733 r_mcangle_other 1.692 r_mcangle_it 1.688 r_scbond_it 1.561 r_scbond_other 1.557 r_angle_other_deg 1.297 r_mcbond_it 1.144 r_mcbond_other 1.143 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1723 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CrystFEL data reduction CrystFEL data scaling MOLREP phasing