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Structure of the FK1 domain of the FKBP51 G64S variant in complex with SAFit1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 12% PEG3350, 0.2 M NH4-acetate and HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.23 44.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.106 α = 90 b = 48.592 β = 90 c = 57.191 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 45.11 99.9 0.061 0.073 0.039 0.999 11.9 6.3 51727
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.12 1.316 1.584 0.869 0.683 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW6 1.1 37.003 51662 2517 99.861 0.144 0.1431 0.1413 0.1706 0.1702 15.762
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 -0.874 0.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.009 r_rigid_bond_restr 10.512 r_dihedral_angle_3_deg 9.055 r_dihedral_angle_4_deg 8.503 r_dihedral_angle_1_deg 7.423 r_scbond_it 6.673 r_scbond_other 6.667 r_lrange_it 5.438 r_lrange_other 5.091 r_scangle_it 4.643
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.009 r_rigid_bond_restr 10.512 r_dihedral_angle_3_deg 9.055 r_dihedral_angle_4_deg 8.503 r_dihedral_angle_1_deg 7.423 r_scbond_it 6.673 r_scbond_other 6.667 r_lrange_it 5.438 r_lrange_other 5.091 r_scangle_it 4.643 r_scangle_other 4.64 r_mcangle_it 2.401 r_mcangle_other 2.4 r_mcbond_other 2.268 r_mcbond_it 2.266 r_angle_refined_deg 2.149 r_angle_other_deg 1.792 r_chiral_restr_other 1.381 r_nbd_refined 0.253 r_symmetry_nbd_other 0.197 r_nbtor_refined 0.179 r_nbd_other 0.164 r_xyhbond_nbd_refined 0.152 r_symmetry_xyhbond_nbd_refined 0.131 r_symmetry_nbd_refined 0.123 r_chiral_restr 0.117 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 961 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing