☰ Navigation Tabs
p47-bound p97-R155H mutant with ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FTK
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.649 f_angle_d 1.002 f_chiral_restr 0.059 f_plane_restr 0.008 f_bond_d 0.004
Sample p47-bound p97-R155H mutant with ADP
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details The grid was blotted for 6 seconds.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 160050 Reported Resolution (Å) 4.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5FTK) Refinement Space REAL Refinement Protocol OTHER Refinement Target CC Overall B Value 122.3 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 44.4
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) -800 Maximum Defocus (nm) -2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 48077 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 2.15 IMAGE ACQUISITION SerialEM 3.9 CTF CORRECTION cryoSPARC 2.15 MODEL FITTING UCSF Chimera 1.14 MODEL REFINEMENT PHENIX 1.18.2-3874 INITIAL EULER ASSIGNMENT cryoSPARC 2.15 FINAL EULER ASSIGNMENT cryoSPARC 2.15 CLASSIFICATION cryoSPARC 2.15 RECONSTRUCTION cryoSPARC 2.15
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1124232