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Tailspike protein 4 (TSP4) from phage CBA120, residues 1-335, obtained in the presence of NaK-Tartrate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SeMet TSP4-N(1-335) structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.8 295 1 M potassium sodium tartrate, 0.2 M sodium chloride, 0.1 M imidazole, pH 7.8
Crystal Properties Matthews coefficient Solvent content 2.64 53.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.03 α = 90 b = 78.03 β = 90 c = 326.87 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M mirrors 2018-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0332 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 27.37 98.9 0.09 0.987 5.1 2.6 25427 52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 98.8 0.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SeMet TSP4-N(1-335) structure 2.6 20 21436 1117 98.74 0.2056 0.2045 0.2063 0.2294 0.2294 RANDOM 80.295
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 0.36 0.73 -2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.864 r_dihedral_angle_3_deg 19.388 r_dihedral_angle_4_deg 17.194 r_dihedral_angle_1_deg 7.795 r_angle_refined_deg 1.845 r_angle_other_deg 1.509 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.864 r_dihedral_angle_3_deg 19.388 r_dihedral_angle_4_deg 17.194 r_dihedral_angle_1_deg 7.795 r_angle_refined_deg 1.845 r_angle_other_deg 1.509 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_other 0.002 r_gen_planes_refined 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4281 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling PHASER phasing