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Hen egg-white lysozyme with ionic liquid ethanolammonium formate 14.4 mol%
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7JMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 ethanolammonium formate 14.4mol% (ca. 50wt%) in water
Crystal Properties Matthews coefficient Solvent content 1.96 37.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.65 α = 90 b = 76.65 β = 90 c = 38.29 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2018-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 1.23980 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.046 54.2 100 0.981 11.3 10.7 7613
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 100 0.852 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7JMU 2.046 54.2 7569 390 99.435 0.164 0.16 0.1666 0.2431 0.2455 18.825
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.277 -1.277 2.554
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.199 r_dihedral_angle_4_deg 18.546 r_dihedral_angle_3_deg 16.782 r_dihedral_angle_1_deg 7.027 r_lrange_it 5.219 r_lrange_other 4.65 r_scangle_it 4.138 r_scangle_other 3.983 r_scbond_it 3.514 r_scbond_other 3.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.199 r_dihedral_angle_4_deg 18.546 r_dihedral_angle_3_deg 16.782 r_dihedral_angle_1_deg 7.027 r_lrange_it 5.219 r_lrange_other 4.65 r_scangle_it 4.138 r_scangle_other 3.983 r_scbond_it 3.514 r_scbond_other 3.125 r_mcangle_other 2.821 r_mcangle_it 2.807 r_rigid_bond_restr 2.588 r_mcbond_it 2.176 r_mcbond_other 2.074 r_angle_refined_deg 1.776 r_angle_other_deg 0.582 r_nbd_other 0.243 r_nbd_refined 0.224 r_symmetry_nbd_other 0.217 r_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.182 r_symmetry_nbd_refined 0.16 r_symmetry_xyhbond_nbd_refined 0.127 r_chiral_restr 0.079 r_symmetry_nbtor_other 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_xyhbond_nbd_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing