X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52890.2 M calcium chloride, 20% w/v PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.0540.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.833α = 90
b = 54.779β = 90.04
c = 134.446γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 X 6M2020-04-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97918APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.655098.90.1050.99211.94.497736
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.6896.40.9310.4530.983.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.6542.4791789503097.60.1540.1520.1914RANDOM29.314
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-5.91-1.422.213.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.034
r_dihedral_angle_3_deg15.26
r_dihedral_angle_4_deg15.036
r_dihedral_angle_1_deg5.919
r_angle_other_deg1.18
r_angle_refined_deg1.176
r_rigid_bond_restr1.14
r_chiral_restr0.05
r_gen_planes_other0.011
r_gen_planes_refined0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.034
r_dihedral_angle_3_deg15.26
r_dihedral_angle_4_deg15.036
r_dihedral_angle_1_deg5.919
r_angle_other_deg1.18
r_angle_refined_deg1.176
r_rigid_bond_restr1.14
r_chiral_restr0.05
r_gen_planes_other0.011
r_gen_planes_refined0.007
r_bond_refined_d0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7076
Nucleic Acid Atoms
Solvent Atoms358
Heterogen Atoms147

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-3000data scaling
HKL-3000data reduction
HKL-3000phasing