7T8F

G93A mutant of human SOD1 bound with Ebselen in P21 space group


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.7292100mM NaOAc pH 4.7, 150mM NaCl, 2.7M ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
2.0238.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.672α = 90
b = 67.989β = 105.61
c = 50.422γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 9M2021-01-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.980000DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.467.9999.40.1090.1510.1040.9765.4349165
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4293.50.4960.6190.4680.5761.62

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2WKO1.448.60949165255199.3770.2040.20290.224914.357
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.144-0.432-1.0790.153
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.371
r_dihedral_angle_other_3_deg29.792
r_dihedral_angle_4_deg23.177
r_dihedral_angle_3_deg13.304
r_dihedral_angle_1_deg7.316
r_lrange_it4.127
r_lrange_other3.981
r_scangle_it2.749
r_scangle_other2.748
r_scbond_it1.803
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.371
r_dihedral_angle_other_3_deg29.792
r_dihedral_angle_4_deg23.177
r_dihedral_angle_3_deg13.304
r_dihedral_angle_1_deg7.316
r_lrange_it4.127
r_lrange_other3.981
r_scangle_it2.749
r_scangle_other2.748
r_scbond_it1.803
r_scbond_other1.802
r_mcangle_it1.719
r_mcangle_other1.716
r_angle_refined_deg1.69
r_angle_other_deg1.561
r_mcbond_it1.049
r_mcbond_other1.049
r_metal_ion_refined0.394
r_nbd_other0.213
r_nbd_refined0.191
r_symmetry_nbd_other0.184
r_symmetry_nbd_refined0.157
r_nbtor_refined0.152
r_xyhbond_nbd_refined0.138
r_symmetry_xyhbond_nbd_refined0.123
r_symmetry_nbtor_other0.08
r_ncsr_local_group_10.08
r_chiral_restr0.065
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_gen_planes_other0.009
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2193
Nucleic Acid Atoms
Solvent Atoms229
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing