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Horse liver alcohol dehydrogenase with NAD and trifluoroethanol at 25K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DXH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7 278 50 MM AMMONIUM N-[TRIS(HYDROXYMETHYL)
METHYL]-2-AMINOETHANE SULFONATE, PH 6.7 (AT 25 C), 0.25 MM EDTA,
10 MG/ML PROTEIN, 1 MM NAD+, 100 MM 2,2,2-TRIFLUOROETHANOL, 12 TO
25 % 2-METHYL-2,4-PENTANEDIOL,
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.17 α = 91.88 b = 51.13 β = 103.03 c = 92.45 γ = 109.87
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 25 CCD ADSC QUANTUM 315r ROSENBAUM ROCK VERTICAL FOCUSINGMIRROR WITH PT, GLASS, PD LANES 2009-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9184 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 19.93 94.3 0.062 0.072 0.027 9.1 4.06 281705 9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 91.3 0.405 0.467 2.8 4.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DXH 1.1 19.93 278830 2775 94.22 0.122 0.1218 0.1215 0.1403 0.1409 RANDOM 13.843
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.3 0.23 0.41 0.15 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.248 r_dihedral_angle_4_deg 13.082 r_dihedral_angle_3_deg 10.948 r_dihedral_angle_1_deg 6.644 r_rigid_bond_restr 2.322 r_angle_refined_deg 1.88 r_angle_other_deg 1.54 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.248 r_dihedral_angle_4_deg 13.082 r_dihedral_angle_3_deg 10.948 r_dihedral_angle_1_deg 6.644 r_rigid_bond_restr 2.322 r_angle_refined_deg 1.88 r_angle_other_deg 1.54 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5570 Nucleic Acid Atoms Solvent Atoms 904 Heterogen Atoms 144
Software Software Software Name Purpose d*TREK data reduction d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing