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Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 2.0 mM VGFER-14 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Varian INOVA 600 2 2D 1H-1H TOCSY 2.0 mM VGFER-14 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Varian INOVA 600 3 2D DQF-COSY 2.0 mM VGFER-14 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Varian INOVA 600 4 2D 1H-13C HSQC 2.0 mM VGFER-14 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Varian INOVA 600 5 2D 1H-1H NOESY 2.0 mM VGFER-14 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger A. T. et.al. 2 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment Sparky Goddard