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Schistosoma Mansoni Carbonic Anhydrase in complex with 4-oxo-N-(4-sulfamoylphenethyl)-1,3,4,6,7,11b-hexahydro-2H-pyrazino[2,1-a]isoquinoline-2-carbothioamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QQM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 20% PEG 6000, 0.1 M citrate pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.8 56.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.83 α = 90 b = 103.83 β = 90 c = 133.06 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.971800 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 48 100 0.086 0.089 1 24.04 19.13 79049
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.83 100 1.455 1.497 0.81 2.32 17.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 6QQM 1.79 48 79049 3862 99.979 0.169 0.1679 0.1776 0.198 0.2034 31.417
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.286 0.143 0.286 -0.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.724 r_dihedral_angle_4_deg 19.475 r_dihedral_angle_3_deg 12.345 r_dihedral_angle_1_deg 7.419 r_lrange_it 7.059 r_lrange_other 7.058 r_scangle_it 6.074 r_scangle_other 6.074 r_scbond_it 4.178 r_scbond_other 4.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.724 r_dihedral_angle_4_deg 19.475 r_dihedral_angle_3_deg 12.345 r_dihedral_angle_1_deg 7.419 r_lrange_it 7.059 r_lrange_other 7.058 r_scangle_it 6.074 r_scangle_other 6.074 r_scbond_it 4.178 r_scbond_other 4.177 r_mcangle_it 3.555 r_mcangle_other 3.549 r_mcbond_it 2.787 r_mcbond_other 2.768 r_angle_refined_deg 1.802 r_angle_other_deg 1.415 r_symmetry_nbd_refined 0.305 r_nbd_other 0.244 r_nbd_refined 0.226 r_symmetry_nbd_other 0.184 r_nbtor_refined 0.172 r_symmetry_xyhbond_nbd_refined 0.145 r_xyhbond_nbd_refined 0.129 r_chiral_restr 0.085 r_symmetry_nbtor_other 0.079 r_metal_ion_refined 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4474 Nucleic Acid Atoms Solvent Atoms 371 Heterogen Atoms 138
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing